Building Structures
Lipid Membranes
Free/Open Source Solution
- CHARMM-GUI (see tutorials from AmberTools)
- VMD with the Membrane (tutorial SharePoint folder) and Membrane Mixer plugins.
- CELLmicrocosmos MembraneEditor
Commercial Solution
- Schrodinger Maestro tutorial
- Materials Studio’s coarse-grained lipid bilayer model: Help > Tutorials > Mesocite tutorials > Coarse-grained molecular dynamics of a lipid bilayer
- AmberTools PACKMOL-Memgen tutorial with the Chemical Computing Group‘s MOE software
Polymers
Free/Open Source Solution
- Moltemplate
- MoSDeF‘s mBuild has support for building polymers (see its tutorials)
- XenoView
- Polymer Modeler
Commercial Solution
- Schrodinger Maestro tutorial SharePoint folder on Building Amorphous Polymers
- Materials Studio’s Polymer Builder: Help > Tutorials > Visualizer tutorials > Using the polymer builder
Carbon Nanotubes
Free/Open Source Solution
- VMD with the nanotube plugin.
- Nano Modeler
- Ascalaph (Download from SourceForge)
Commercial Solution
- Materials Studio’s Nanostructure Builder: Help > Topics > Building Tools > Nanostructure Builder
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